The Spanish boss has suggested that he was not pleased by Neymar's showboating at the end of the fixture as Barcelona moved close to the treble.
The Uefa president has urged his organisation's 54 members to vote against the Swiss due to the latest corruption scandal to hit the governing body.
The goalkeeper has been jeered by his own supporters after making a string of high-profile mistakes this season.
The injured Austrian is confident his team-mates can overturn their deficit to Barcelona, while Medhi Benatia insists they must believe they can go through.
The Uruguay international struck for the seventh time in four Ligue 1 games, while Zlatan Ibrahimovic netted two goals and made another for Maxwell with an exquisite chip.
The Barcelona star sent Twitter into meltdown on Wednesday with his match-winning performance against Bayern Munich at Camp Nou.
The Bavarians were back to their imperious best on Saturday as they took apart the visitors in the first half, with both goals coming inside the opening 45 minutes.